I brought the franken tranny to a shop, and after a few days i got a phone call saying it was done.
Guy explained that they remeasured and reshimmed the shafts,everything works fine.
He also said that because its such an unusual trans with unusual parts, they will not warranty their work.
So $250 later i hopefully now have a working transmission. I'll find out mon/tues when i put the car back together.